Example:
FASTA -->
RDF multistate -->
RDF binary
DNA FASTA file |
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>Nuu1
TTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCA
CCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCAT
GAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAA
AACCCAATCCACATCAAAACCCCCCCCCCATGCTTACAAGCAAGTAC
AACAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA
CCCCTCACCCACTAGGATATCAACAAACCTACCCACCCTTAACAGTA
CATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAAT
CCCTTCTCGTCCCCATGGATGACCCCCCTCA
>Nuu4
TTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCA
CCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCAT
GAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAA
AACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTAC
AGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA
CCCCTCACCCACTAGGATATCAACAAACCTACCCACCCTTAACAGTA
CATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAAT
CCCTTCTCGCCCCCATGGATGACCCCCCTCA
Nuu7
TTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCA
CCCATCAACAACCGCTATGTACTTCGTACATTACTGCCAGTCACCAT
GAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACATAAA
AACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTAC
AGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA
CCCCTCACCCATTAGGATACCAACAAACCTACCCACCCTTAACAGTA
CATAGTACATAAAACCATTTACCGTACATAGCACATTACAGTCAAAT
CCCTTCTCGCCCCCATGGATGACCCCCCTCA
Nuu8
TTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCA
CCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGTCACCAT
GAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACATAAA
AACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTAC
AGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA
CCCCTCACCCACTAGGATACCAACAAACCTATCCACCCTTAACAGTA
CATAGTACATAAAACCATTTACCGTACATAGCACATTACAGTCAAAT
CCCTTCTCGCCCCCATGGATGACCCCCCTCA
>NuuX
TTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCA
CCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGTCACCAT
GAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACATAAA
AACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTAC
AGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA
CCCCTCACCCACTAGGATACCAACAAACCTAGCCACCCTTAACAGTA
CATAGTACATAAAACCATTTACCGTACATAGCACATTACAGTCAAAT
CCCTTCTCGCCCCCATGGATGACCCCCCTCA
(Old) multistate RDF Format |
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.......11111111111111111111111111
.......66666666666666666666666666
.......01111111222222222223333333
.......91124788112457779991222466
.......21497259373260480489457227
Nuu1...TCCGCTCCATTCCCGTCCTGTTCTTA 1
Nuu4...TCCGCTCTGTTCCCGTCCTGTTCTCA 1
Nuu7...CTCACTCTGTTCCTGCCCTATTCTCA 1
Nuu8...TTCACTCTGTTCCCGCTCTATTCTCA 1
NuuX...TTCACTCTGTTCCCGCGCTATTCTCA 1
1010101010101010101010101010101010101010101010101010
(Old) binary RDF Format with N at np 16290 of NuuX |
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.......11111111111111111111111111
.......66666666666666666666666666
.......01111111222222222223333333
.......91124788112457779991222466
.......21497259373260480489457227
Nuu1...00000000000000000000000000 1
Nuu4...00000001100000000000000010 1
Nuu7...11010001100001010001000010 1
Nuu8...01010001100000011001000010 1
NuuX...0101000110000001N001000010 1
1010101010101010101010101010101010101010101010101010
(New) binary RDF without N (shown in old format for easier comparison) |
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.......11111111111111111111111111
.......66666666666666666666666666
.......01111111222222222223333333
.......91124788112457779991222466
.......21497259373260480489457227
Nuu1...00000000000000000000000000 1
Nuu4...00000001100000000000000010 1
Nuu7...11010001100001010001000010 1
Nuu8...01010001100000011001000010 1
NuuX...01010001100000011001000010 1
1010101010101010101010101010101010101010101010101010
N.B.: "." written for easier legibility to represent an empty character space.
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